[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 169 items for (author: kyle & ra)

EMDB-43737:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

PDB-8w20:
Umb1 umbrella toxin particle
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

PDB-8w22:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-42286:
T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42355:
T33-ml30 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42382:
T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42390:
T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ui2:
T33-ml28 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ukm:
T33-ml30 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8umr:
T33-ml35 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8un1:
T33-ml23 Assembly Intermediate - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42181:
T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-42381:
T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8uf0:
T33-ml23 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

PDB-8ump:
T33-ml35 - Designed Tetrahedral Protein Cage Using Machine Learning Algorithms
Method: single particle / : Castells-Graells R, Meador K, Sawaya MR, Yeates TO

EMDB-29700:
Cryo-EM imaging scaffold subunits A and B used to display KRAS G12C complex with GDP
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29713:
KRAS G12C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29715:
KRAS G12C complex with GDP and AMG 510 imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29718:
Green Fluorescence Protein imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29719:
KRAS G12V complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29720:
KRAS G13C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g3k:
Cryo-EM imaging scaffold subunits A and B used to display KRAS G12C complex with GDP
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g42:
KRAS G12C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g47:
KRAS G12C complex with GDP and AMG 510 imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g4e:
Green Fluorescence Protein imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g4f:
KRAS G12V complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

PDB-8g4h:
KRAS G13C complex with GDP imaged on a cryo-EM imaging scaffold
Method: single particle / : Castells-Graells R, Sawaya MR, Yeates TO

EMDB-29299:
Langya virus F glycoprotein ectodomain in prefusion form
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-29300:
Mojiang virus F ectodomain in prefusion form
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

PDB-8fmx:
Langya virus F glycoprotein ectodomain in prefusion form
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

PDB-8fmy:
Mojiang virus F ectodomain in prefusion form
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-27973:
Erwinia amylovora 70S Ribosome
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28003:
Erwinia phage vB_EamM_RAY (RAY) Capsid Vertex
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28004:
Erwinia phage vB_EamM_RAY (RAY) Capsid Collar
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28005:
Erwinia phage vB_EamM_RAY (RAY) Tail Sheath
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28006:
Erwinia phage vB_EamM_RAY (RAY) Baseplate
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28007:
Erwinia phage vB_EamM_RAY (RAY) Chimallin
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28008:
Erwinia phage vB_EamM_RAY (RAY) Putative PhuZ Filament
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28009:
Pseudomonas chlororaphis phage 201phi2-1 PhuZ Filament
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28010:
Pseudomonas phage phiKZ PhuZ Filament
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-27550:
Subtomogram average of the HN/F fusion complex on authentic viral surfaces of HPIV3
Method: subtomogram averaging / : Marcink TC, Porotto M, des Georges A, Moscona A

EMDB-27551:
Subtomogram average of the PIA174 Fab/F complex on authentic viral surfaces of HPIV3
Method: subtomogram averaging / : Marcink TC, Cheng W, Porotto M, des Georges A, Moscona A

EMDB-14717:
SARS CoV Spike protein, Closed C3 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

EMDB-14718:
SARS CoV Spike protein, Closed C1 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

EMDB-14724:
SARS CoV Spike protein, Open conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

PDB-7zh1:
SARS CoV Spike protein, Closed C3 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

PDB-7zh2:
SARS CoV Spike protein, Closed C1 conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

PDB-7zh5:
SARS CoV Spike protein, Open conformation
Method: single particle / : Toelzer C, Gupta K, Yadav SKN, Buzas D, Borucu U, Schaffitzel C, Berger I

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more